DESeq Desk

Bulk RNA-seq differential expression in the browser: load a counts matrix and a sample sheet and the pydeseq2 0.5.4 pipeline runs free (size factors, dispersions, Wald tests, Cook's and independent filtering, BH-adjusted p-values, LFC shrinkage), then a review of what the result supports or a pydeseq2 script that reproduces it. Derived from the agent skill @k-dense-ai/pydeseq2 (k-dense-ai/scientific-agent-skills).

Every public app is built from a security-scanned skill and must pass a clean scan — skill and frontend — before it can be listed. Have a skill of your own? Turn it into an app — or read the step-by-step walkthrough.